Basic Information
Locus ID:
Ceq01G0369
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 5958405 | 5959919 | + | Ceq01G0369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 40,238.74 Da | 60.48 | 72.11 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 140 | 183 | 9.45052E-17 | - |
| Pfam | PF13639 | Ring finger domain | 140 | 183 | 4.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 189 | 2.12E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 190 | 1.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 182 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 221 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_030948594.1 | RING-H2 finger protein ATL52-like [Quercus lobata] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6R775 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_012455 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology