Basic Information
Locus ID:
Ceq01G0301
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 4565076 | 4593772 | - | Ceq01G0301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 107,898.12 Da | 38.30 | 93.50 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 773 | 912 | 1.2496E-54 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 561 | 761 | 7.23721E-113 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 38 | 238 | 2.10056E-114 | - |
| CDD | cd18787 | SF2_C_DEAD | 252 | 397 | 9.39901E-52 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 442 | 502 | 5.1E-10 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 584 | 746 | 7.1E-42 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 61 | 223 | 5.9E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 785 | 903 | 4.2E-25 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 361 | 388 | 3.9E-6 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 262 | 341 | 1.0E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 104 | 410 | 1.78E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 448 | 495 | 2.35E-10 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 627 | 925 | 2.09E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 764 | 942 | 1.2E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 434 | 508 | 1.2E-12 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 241 | 425 | 4.5E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 22 | 240 | 1.2E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 545 | 763 | 1.3E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 578 | 775 | 4.4E-55 | IPR014001 |
| SMART | SM00487 | ultradead3 | 55 | 247 | 2.5E-52 | IPR014001 |
| SMART | SM00490 | helicmild6 | 812 | 903 | 6.6E-27 | IPR001650 |
| SMART | SM00490 | helicmild6 | 289 | 388 | 1.1E-24 | IPR001650 |
| SMART | SM00490 | helicmild6 | 434 | 516 | 0.056 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 771 | 942 | 24.700218 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 420 | 565 | 8.671531 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 559 | 587 | 10.944776 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 237 | 27.529076 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 36 | 64 | 11.056714 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 590 | 760 | 27.453627 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 268 | 429 | 22.100971 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 706 | 714 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_041016041.1 | eukaryotic initiation factor 4A-3 [Juglans microcarpa x Juglans regia] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0KFM9 | RNA helicase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology