Basic Information
Locus ID:
Ceq01G0281
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 4362610 | 4390803 | - | Ceq01G0281 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 99,465.09 Da | 31.82 | 79.33 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 6 | 74 | 3.16696E-29 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 66 | 1.9E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 76 | 1.78E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 1.6E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 4.9E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.093571 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 900 | 923 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_023898643.1 | binding partner of ACD11 1-like [Quercus suber] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5YDE8 | RRM domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA06962 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology