Basic Information
Locus ID:
Ceq01G0097
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 1730859 | 1732711 | + | Ceq01G0097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 23,762.40 Da | 63.55 | 93.40 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 120 | 163 | 1.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 168 | 6.31E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 167 | 2.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 162 | 5.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 163 | 12.445019 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050278023.1 | RING-H2 finger protein ATL47-like [Quercus robur] | 0 |
| Q9SJJ7 | RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2N9IUR4 | RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57019 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0096, Ceq01G0097 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0071, Cgl01G0072, Cgl01G0073 |