Basic Information
Locus ID:
Ceq01G0096
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 1726516 | 1727265 | + | Ceq01G0096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 22,035.26 Da | 52.34 | 85.20 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 112 | 155 | 4.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 107 | 159 | 1.25E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 159 | 1.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 154 | 2.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 155 | 12.341748 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22500.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_030958808.1 | RING-H2 finger protein ATL57 [Quercus lobata] | 0 |
| Q9SK92 | E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2KM87 | RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0096, Ceq01G0097 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0071, Cgl01G0072, Cgl01G0073 |