Basic Information
Locus ID:
CQ.Regalona.r1.9BG0021890
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 69759454 | 69775460 | - | CQ.Regalona.r1.9BG0021890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 131,125.80 Da | 48.20 | 82.47 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1023 | 1127 | 6.44265E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 338 | 704 | 3.70188E-78 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1022 | 1118 | 2.6E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 358 | 781 | 8.3E-64 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 712 | 1174 | 3.07E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 322 | 704 | 1.5E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 887 | 929 | 1.98E-7 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 929 | 1177 | 1.9E-54 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 884 | 928 | 2.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 564 | 717 | 2.4E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 469 | 557 | 2.1E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 316 | 400 | 3.8E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 334 | 671 | 1.6E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1035 | 1118 | 2.7E-15 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 991 | 1171 | 13.750519 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 486 | 666 | 12.244406 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 898 | 907 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 593 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021735489.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LS17 | Helicase-like transcription factor CHR28 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology