Basic Information
Locus ID:
CQ.Regalona.r1.9BG0020950
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 68196769 | 68201726 | - | CQ.Regalona.r1.9BG0020950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 66,565.03 Da | 40.92 | 84.09 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 218 | 455 | 1.5E-57 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 4 | 95 | 1.1E-7 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 99 | 3.6E-6 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 5 | 71 | 9.103126 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 217 | 479 | 63.351719 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 207 | - | - |
| Coils | Coil | Coil | 546 | 566 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19850.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021735362.1 | BTB/POZ domain-containing protein At3g19850-like [Chenopodium quinoa] | 0 |
| Q9LT24 | BTB/POZ domain-containing protein At3g19850 OS=Arabidopsis thaliana OX=3702 GN=At3g19850 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QMF0 | NPH3 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_162510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7442 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25410, gene_25411 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038420 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g203500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14395, Sbi_jg53554 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10188 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012574 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl78123 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015711, gene:ENSEOMG00000037522 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0000170, CQ.Regalona.r1.9BG0020950 |
| Apiaceae | Apium graveolens | 2 | Ag5G01809, Ag8G01993 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G006360, scaffold008549G000160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717133, gene-LOC103724294 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.996.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G28243 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G50280.1, AT3G19850.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011386m.g.v1.0, Thhalv10020411m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g37130.v2.2, Sp3g17860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB07g005030.2N, BniB07g030770.2N, BniB07g050950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0611 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0603 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g00300, gene.Cymno10g10140 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g00840, gene.Thate03g03090, gene.Thate05g02520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.960 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026945 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08511 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2688, BH09.2923, CH09.3134 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299680, gene-QOZ80_4BG0330350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210650.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047452 |
| Poaceae | Oryza coarctata | 2 | Oco07G019060, Oco08G018330 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G280900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300184 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001080, Chr25G000830, Chr26G018210 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G944800, Tel3E01G129700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG077250, gene_TRIDC2BG084740 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G553600.1, TraesCS2B02G585400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066500_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23186 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1415, evm.TU.LG21.1258 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g10760, gene.Posoc08g06120 |
| Salicaceae | Populus euphratica | 2 | populus_peu06712, populus_peu20598 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615341, gene-LOC132623965 |
| Solanaceae | Solanum chilense | 1 | SOLCI003358600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005146 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.26978_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2736 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20990.v3.1 |