Basic Information
Locus ID:
CQ.Regalona.r1.9BG0018920
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 65105226 | 65107921 | - | CQ.Regalona.r1.9BG0018920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 42,112.41 Da | 35.73 | 92.90 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 195 | 324 | 3.9E-14 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 34 | 107 | 5.6E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 180 | 325 | 2.62E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 29 | 170 | 2.49E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 187 | 325 | 6.1E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 23 | 157 | 2.9E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 59 | 173 | 2.2 | IPR000782 |
| SMART | SM00554 | fasc_3 | 221 | 325 | 8.0E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 183 | 322 | 10.703627 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 23 | 170 | 12.103788 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 368 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_021766350.1 | fasciclin-like arabinogalactan protein 2 [Chenopodium quinoa] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MGL8 | Fasciclin-like arabinogalactan protein 2 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology