Basic Information
Locus ID:
CQ.Regalona.r1.9BG0018660
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 64622469 | 64631510 | + | CQ.Regalona.r1.9BG0018660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 42,894.56 Da | 56.88 | 86.54 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 161 | 208 | 7.97557E-11 | - |
| Pfam | PF12906 | RING-variant domain | 161 | 207 | 2.2E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 211 | 7.46E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 214 | 3.4E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 160 | 208 | 4.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 153 | 214 | 20.452677 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 58 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021764063.1 | uncharacterized protein LOC110728724 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MGP6 | RING-CH-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology