Basic Information
Locus ID:
CQ.Regalona.r1.9BG0015150
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 45515339 | 45520166 | - | CQ.Regalona.r1.9BG0015150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 29,043.43 Da | 61.09 | 61.64 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 40 | 91 | 5.70809E-22 | - |
| Pfam | PF13445 | RING-type zinc-finger | 42 | 87 | 3.5E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 102 | 5.7E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 103 | 3.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 42 | 89 | 2.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 42 | 90 | 12.725326 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 57 | 66 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_021767764.1 | E3 ubiquitin-protein ligase RMA1H1-like [Chenopodium quinoa] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N9A6 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology