Basic Information
Locus ID:
CQ.Regalona.r1.9BG0012480
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 17385005 | 17392629 | + | CQ.Regalona.r1.9BG0012480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 96,018.04 Da | 60.84 | 70.48 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 797 | 835 | 1.89213E-15 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 795 | 841 | 2.7E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 781 | 842 | 7.07E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 782 | 848 | 3.5E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 797 | 836 | 10.010774 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 584 | - | - |
| Coils | Coil | Coil | 418 | 438 | - | - |
| Coils | Coil | Coil | 358 | 378 | - | - |
| Coils | Coil | Coil | 725 | 752 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021729856.1 | uncharacterized protein LOC110696831 [Chenopodium quinoa] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N6H5 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology