Basic Information
Locus ID:
CQ.Regalona.r1.9BG0011370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Occludin homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 13734822 | 13743506 | + | CQ.Regalona.r1.9BG0011370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 119,109.42 Da | 52.53 | 59.38 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07303 | Occludin homology domain | 971 | 1064 | 4.0E-13 | IPR010844 |
| Gene3D | G3DSA:6.10.140.340 | - | 975 | 1067 | 4.0E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 897 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 841 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 763 | - | - |
| Coils | Coil | Coil | 913 | 933 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21290.1 | dentin sialophosphoprotein-related. | 0 |
| RefSeq | XP_021774195.1 | uncharacterized protein LOC110738137 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N041 | OCEL domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18077 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21259 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011409 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g211340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11872, Sbi_jg46802 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21106 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009399 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl80218, Sgl80219, Sgl82668 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017241, gene:ENSEOMG00000038247 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0011090, CQ.Regalona.r1.9BG0011370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30116220 |
| Apiaceae | Apium graveolens | 2 | Ag5G00889, Ag6G01413 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G007390 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1882.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G05189, Ftri1G11915 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019924m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19330.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g042050.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07130 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g12830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-793 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.21 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015239 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18088 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4723, CH01.5300, Contig181.146 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236550, gene-QOZ80_3BG0291490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406300.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037493 |
| Poaceae | Oryza coarctata | 2 | Oco05G004870, Oco06G004990 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G455600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101402, Pt_Chr0101403, Pt_Chr0107706, Pt_Chr0107707 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G025770, Chr12G013580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G504700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG000210, gene_TRIDC4BG051600 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G002100.1, TraesCS4B02G303000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb006560_P001, Zm00001eb104770_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2682, nbis-gene-4270, nbis-gene-4271 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1915, Zma_g4272 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1119, evm.TU.LG11.393 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g30020, gene.Posoc04g17480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.644 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27765 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15520 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8024, nbisL1-mrna-8025 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019065 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7402 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24318 |
| Salicaceae | Populus euphratica | 2 | populus_peu12132, populus_peu37060 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633447 |
| Solanaceae | Solanum chilense | 1 | SOLCI003839900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014847 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10034 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1785 |
| Zosteraceae | Zostera marina | 2 | Zosma01g07280.v3.1, Zosma01g08960.v3.1 |