Basic Information
Locus ID:
CQ.Regalona.r1.9BG0011330
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 13593579 | 13596834 | + | CQ.Regalona.r1.9BG0011330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 86,909.46 Da | 39.50 | 103.35 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 526 | 746 | 3.74574E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 212 | 503 | 5.36453E-92 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 546 | 693 | 1.3E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 26 | 64 | 5.6E-8 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 216 | 454 | 2.8E-34 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 520 | 759 | 5.43E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 3 | 133 | 2.66E-32 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 199 | 499 | 7.06E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 175 | 509 | 3.9E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 511 | 764 | 1.8E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 147 | 7.9E-42 | IPR027417 |
| SMART | SM00382 | AAA_5 | 554 | 739 | 8.3E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 214 | 491 | 34.759495 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 528 | 762 | 18.627579 | IPR003439 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021849835.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N046 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology