Basic Information
Locus ID:
CQ.Regalona.r1.9BG0011270
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 13490054 | 13500008 | + | CQ.Regalona.r1.9BG0011270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 60,259.85 Da | 50.04 | 74.16 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 291 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 67 | 535 | 3.21E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 106 | 541 | 6.4E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 302 | 342 | 8.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 291 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 457 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 57 | 95 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 399 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 174 | 8.6 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 22 | 543 | 6.0E-193 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 134 | 148 | - | IPR018067 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 261 | 275 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 150 | 178 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 319 | 347 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 121 | 149 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 263 | 290 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 512 | 541 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 376 | 403 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 291 | 318 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 74 | 94 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 404 | 429 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 348 | 375 | 1.1E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 430 | 456 | 1.1E-159 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 207 | - | - |
| Coils | Coil | Coil | 542 | 543 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_021774205.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Chenopodium quinoa] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N052 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology