Basic Information
Locus ID:
CQ.Regalona.r1.9BG0009720
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
neutrophil clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 10352450 | 10355851 | + | CQ.Regalona.r1.9BG0009720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 101,892.62 Da | 37.75 | 87.93 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 590 | 865 | 6.30774E-93 | - |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 96 | 134 | 1.8E-6 | IPR025875 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 588 | 861 | 4.1E-46 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 51 | 68 | 9.2E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 328 | 366 | 2.9E-4 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 44 | 439 | 1.02E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 572 | 873 | 2.53E-75 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 325 | 5.4E-72 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 662 | 885 | 1.7E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 555 | 661 | 8.1E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 329 | 454 | 2.4E-28 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 94 | 116 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 213 | 0.39 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 117 | 140 | 6.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 392 | 416 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 166 | 26.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 584 | 866 | 4.5E-37 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 584 | 866 | 39.93351 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 96 | 118 | 7.704254 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 709 | 721 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 590 | 612 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 480 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021749640.1 | receptor-like kinase TMK4 [Chenopodium quinoa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIU5 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_061690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology