Basic Information
Locus ID:
CQ.Regalona.r1.9BG0006480
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 6751874 | 6760498 | + | CQ.Regalona.r1.9BG0006480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 45,988.20 Da | 46.99 | 67.67 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 9.1737E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 7.32032E-33 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 2.01492E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 9.7E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 317 | 4.5E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 2.3E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 338 | 1.18E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 221 | 2.55E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 3.76E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 238 | 339 | 3.8E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 135 | 6.2E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 136 | 237 | 3.4E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 4.9E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 3.6E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 8.6E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 17.182348 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.368207 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 14.760482 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021716558.1 | oligouridylate-binding protein 1B-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LDI1 | Oligouridylate-binding protein 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology