Basic Information
Locus ID:
CQ.Regalona.r1.9BG0005830
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 5919324 | 5930374 | - | CQ.Regalona.r1.9BG0005830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 146,562.80 Da | 40.77 | 85.81 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 15 | 155 | 1.03314E-47 | - |
| CDD | cd14066 | STKc_IRAK | 519 | 779 | 2.3127E-84 | - |
| CDD | cd01989 | STK_N | 812 | 915 | 3.64319E-34 | - |
| Pfam | PF00069 | Protein kinase domain | 516 | 771 | 1.8E-39 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1083 | 1298 | 2.0E-30 | IPR000719 |
| Pfam | PF00582 | Universal stress protein family | 15 | 130 | 3.5E-5 | IPR006016 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 15 | 130 | 5.19E-9 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 489 | 772 | 2.43E-67 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1036 | 1299 | 2.43E-62 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1033 | 1083 | 8.0E-11 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 12 | 143 | 3.2E-8 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1117 | 1308 | 7.2E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1084 | 1116 | 8.9E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 491 | 585 | 2.6E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 586 | 787 | 1.6E-48 | - |
| SMART | SM00220 | serkin_6 | 513 | 777 | 2.4E-28 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1056 | 1304 | 2.4E-17 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1056 | 1304 | 29.290607 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 513 | 776 | 34.802868 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1158 | 1170 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 631 | 643 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 284 | - | - |
| Coils | Coil | Coil | 455 | 482 | - | - |
| Coils | Coil | Coil | 383 | 403 | - | - |
| Coils | Coil | Coil | 927 | 947 | - | - |
| Coils | Coil | Coil | 1001 | 1029 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_021716489.1 | U-box domain-containing protein 35-like [Chenopodium quinoa] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LDB8 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah028837 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0005910, CQ.Regalona.r1.9BG0005830 |