Basic Information
Locus ID:
CQ.Regalona.r1.9BG0003530
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 3709878 | 3713730 | + | CQ.Regalona.r1.9BG0003530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 52,484.30 Da | 43.34 | 102.92 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 82 | 1.7E-11 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 150 | 354 | 7.59E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 111 | 407 | 2.3E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 67 | 2.0E-6 | - |
| SMART | SM00256 | fbox_2 | 32 | 73 | 0.0087 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03100.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021716229.1 | F-box protein At5g03100-like [Chenopodium quinoa] | 0 |
| Q501G5 | F-box protein At5g03100 OS=Arabidopsis thaliana OX=3702 GN=At5g03100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LCP4 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 6 | Ah003362, Ah004975, Ah010432, Ah010433, Ah011144, Ah028126 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g112770, BVRB_5g112780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42324, Sbi_jg44916 |
| Amaranthaceae | Suaeda glauca | 14 | Sgl35055, Sgl35076, Sgl35086, Sgl40446, Sgl40461, Sgl40471 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000002595, gene:ENSEOMG00000008169 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.4BG0001260, CQ.Regalona.r1.4BG0001450 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G01722, Ag3G02802, Ag9G02757 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000298, Pov_00000300, Pov_00025260 |