Basic Information
Locus ID:
CQ.Regalona.r1.9BG0001370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
DUF1771
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 1686930 | 1697047 | - | CQ.Regalona.r1.9BG0001370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 60,601.21 Da | 51.01 | 65.78 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08590 | Domain of unknown function (DUF1771) | 318 | 381 | 1.5E-17 | IPR013899 |
| Gene3D | G3DSA:1.10.8.10 | - | 3 | 78 | 4.4E-5 | - |
| Gene3D | G3DSA:3.30.1370.110 | - | 365 | 413 | 8.4E-6 | - |
| SMART | SM01162 | DUF1771_2 | 317 | 382 | 2.0E-20 | IPR013899 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58720.1 | smr (Small MutS Related) domain-containing protein. | 0 |
| RefSeq | XP_021715529.1 | SMR domain-containing protein At5g58720-like [Chenopodium quinoa] | 0 |
| O65573 | SMR domain-containing protein At5g58720 OS=Arabidopsis thaliana OX=3702 GN=PIPC PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXD0 | Smr domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5789 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1569, Sbi_jg34973 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3176 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003362 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21287, Sgl26629, Sgl72786, Sgl76325 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005755, gene:ENSEOMG00000035512 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004300, CQ.Regalona.r1.9BG0001370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30061470 |
| Apiaceae | Apium graveolens | 1 | Ag6G02105 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710887 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1473.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19608 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013268m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g20410.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g038160.2N, BniB05g038170.2N, BniB08g012980.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1880 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1935 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g05040 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0257s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1095 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016315 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19171 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.136, BH02.118, CH02.145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0001250, gene-QOZ80_1BG0049700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051525 |
| Poaceae | Oryza coarctata | 2 | Oco01G005500, Oco02G005580 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g12530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G010200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204918, Pt_Chr0205085 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G017160, Chr21G015990 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G269800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020160, gene_TRIDC3BG030440 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G150300.2, TraesCS3B02G177300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb119510_P001, Zm00001eb126060_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24305 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9531 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1824, evm.TU.LG14.51 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g13500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.925 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30092 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15665 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16291 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.548 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015844 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4452 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20858 |
| Salicaceae | Populus euphratica | 1 | populus_peu35804 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605804 |
| Solanaceae | Solanum chilense | 1 | SOLCI006106400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023358 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9404_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1196 |