Basic Information
Locus ID:
CQ.Regalona.r1.9BG0000540
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 733860 | 744350 | + | CQ.Regalona.r1.9BG0000540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 99,387.47 Da | 47.79 | 82.53 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 704 | 880 | 4.4423E-65 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 289 | 879 | 4.4E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 287 | 882 | 2.75E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 274 | 506 | 2.1E-67 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 602 | 884 | 1.9E-56 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 289 | 882 | 57.155304 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 290 | 305 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 825 | 842 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 645 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021715648.1 | ubiquitin carboxyl-terminal hydrolase 8-like [Chenopodium quinoa] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LXL1 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology