Basic Information
Locus ID:
CQ.Regalona.r1.9BG0000420
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 559425 | 560633 | - | CQ.Regalona.r1.9BG0000420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 44,918.53 Da | 38.91 | 101.05 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 1 | 35 | 1.283E-15 | - |
| Pfam | PF04564 | U-box domain | 1 | 62 | 1.3E-9 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 84 | 379 | 7.3E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 63 | 3.44E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 65 | 9.3E-17 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 78 | 388 | 2.2E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 1 | 58 | 6.3E-13 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 65 | 26.326569 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 265 | 309 | 8.7674 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021715661.1 | E3 ubiquitin-protein ligase PUB23-like [Chenopodium quinoa] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXM4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology