halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.9BG0000410

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: RING-type E3 ubiquitin transferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9B	554147	554656	+	CQ.Regalona.r1.9BG0000410

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.16	18,995.52 Da	47.27	114.85	0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF48371	ARM repeat	3	131	2.99E-5	IPR016024
Gene3D	G3DSA:1.25.10.10	-	1	153	1.5E-6	IPR011989

Best hit

Source	Best Hit ID	Description
TAIR	AT2G35930.1	plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.
RefSeq	XP_021720566.1	E3 ubiquitin-protein ligase PUB24-like [Chenopodium quinoa]
Swiss-Prot	Q84TG3	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1
TrEMBL	A0A803KR98	RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg15140, jg15141, jg29567, jg31920, jg31921, jg36048, jg3658 ... jg36049, jg37634, jg37635, jg8106, jg8107
Aizoaceae	Mesembryanthemum crystallinum	3	gene_15245, gene_5728, gene_6859
Amaranthaceae	Atriplex hortensis	6	Ah003138, Ah003139, Ah003140, Ah003141, Ah027734, Ah027735
Amaranthaceae	Beta vulgaris	4	BVRB_5g108520, BVRB_5g108540, BVRB_7g171170, BVRB_7g171180
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15716, Sbi_jg26483, Sbi_jg26484, Sbi_jg34079 ... Sbi_jg34080, Sbi_jg56518
Amaranthaceae	Salicornia europaea	3	Seu_jg13742, Seu_jg15017, Seu_jg15018
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001811, GOSA_00001813
Amaranthaceae	Suaeda glauca	4	Sgl51464, Sgl51465, Sgl56752, Sgl56753
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000004196, gene:ENSEOMG00000006108 ... gene:ENSEOMG00000006169, gene:ENSEOMG00000006481, gene:ENSEOMG00000021705, gene:ENSEOMG00000023512, gene:ENSEOMG00000024384, gene:ENSEOMG00000025405, gene:ENSEOMG00000037919, gene:ENSEOMG00000039295
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.5AG0011090, CQ.Regalona.r1.5AG0011110 ... CQ.Regalona.r1.5BG0011590, CQ.Regalona.r1.5BG0011610, CQ.Regalona.r1.7AG0005410, CQ.Regalona.r1.7AG0005420, CQ.Regalona.r1.9BG0000400, CQ.Regalona.r1.9BG0000410, CQ.Regalona.r1.9BG0000420
Apiaceae	Apium graveolens	8	Ag10G01682, Ag10G01683, Ag10G02093, Ag10G02094, Ag10G02095 ... Ag10G02096, Ag2G01821, Ag2G01883
Arecaceae	Cocos nucifera	6	COCNU_01G018760, COCNU_01G018770, COCNU_09G001680 ... COCNU_11G000520, COCNU_15G001290, COCNU_15G001300
Arecaceae	Phoenix dactylifera	6	gene-LOC103695509, gene-LOC103703151, gene-LOC103704327 ... gene-LOC103710109, gene-LOC103714294, gene-LOC103714316
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.745.V1.1, AsparagusV1_04.746.V1.1 ... AsparagusV1_09.138.V1.1
Asteraceae	Flaveria trinervia	12	Ftri11G28535, Ftri11G29175, Ftri12G27196, Ftri16G29824 ... Ftri17G17155, Ftri17G20105, Ftri2G33367, Ftri8G15003, Ftri9G14724, Ftri9G23012, FtriNA00046, FtriNA28455
Brassicaceae	Arabidopsis thaliana	3	AT2G35930.1, AT3G11840.1, AT3G52450.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10010389m.g.v1.0, Thhalv10016730m.g.v1.0 ... Thhalv10020668m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g10070.v2.2, Sp4g18180.v2.2, Sp5g09850.v2.2
Brassicaceae	Brassica nigra	10	BniB01g008460.2N, BniB01g008510.2N, BniB01g053150.2N ... BniB02g074170.2N, BniB06g008190.2N, BniB06g066490.2N, BniB07g025590.2N, BniB07g056750.2N, BniB08g022640.2N, BniB08g066770.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G0792, Ceq05G1879, Ceq05G1880
Casuarinaceae	Casuarina glauca	2	Cgl04G0899, Cgl05G1870
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno07g00870, gene.Cymno08g03690, gene.Cymno08g08270 ... gene.Cymno08g08280, gene.Cymno10g10400
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g14200, gene.Thate06g10260, gene.Thate08g17980
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-447, nbisL1-mrna-8522
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1902, evm.TU.LG09.568, evm.TU.LG09.569
Plantaginaceae	Plantago ovata	3	Pov_00015699, Pov_00015700, Pov_00026587
Poaceae	Echinochloa crus-galli	14	AH02.3984, AH05.259, AH07.2109, AH09.2776, AH09.953 ... BH02.4003, BH05.301, BH07.2067, BH09.1024, BH09.3013, CH05.352, CH07.1914, CH09.1157, CH09.3179
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_1AG0040980, gene-QOZ80_1BG0091030 ... gene-QOZ80_2BG0188660, gene-QOZ80_4AG0298690, gene-QOZ80_4AG0318110, gene-QOZ80_4BG0329390, gene-QOZ80_4BG0349480, gene-QOZ80_5AG0382340, gene-QOZ80_5BG0429300
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0167350.1.CDS1 ... HORVU.MOREX.r3.2HG0213610.1.CDS1, HORVU.MOREX.r3.3HG0299890.1.CDS1, HORVU.MOREX.r3.6HG0574110.1.CDS1, HORVU.MOREX.r3.6HG0628340.1.CDS1, HORVU.MOREX.r3.6HG0628400.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_002952, gene-QYE76_018097, gene-QYE76_022792 ... gene-QYE76_022794, gene-QYE76_043938, gene-QYE76_047626, gene-QYE76_056715, gene-QYE76_056721
Poaceae	Oryza coarctata	10	Oco01G025730, Oco02G026660, Oco03G011890, Oco04G012320 ... Oco07G005490, Oco07G019810, Oco08G005500, Oco08G019080, Oco23G002280, Oco24G001830
Poaceae	Oryza sativa	5	LOC_Os01g64570.1, LOC_Os02g33590.1, LOC_Os04g34030.1 ... LOC_Os04g58920.1, LOC_Os12g06410.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G178000, gene-BS78_03G347500 ... gene-BS78_04G155300, gene-BS78_06G089700, gene-BS78_06G291400, gene-BS78_08G033200
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0200910, Pt_Chr0200914, Pt_Chr0300057, Pt_Chr0302741 ... Pt_Chr0302784, Pt_Chr0601314, Pt_Chr0601340
Poaceae	Sporobolus alterniflorus	11	Chr03G020900, Chr04G022610, Chr06G010370, Chr06G024380 ... Chr08G021420, Chr09G014910, Chr15G011840, Chr23G000460, Chr23G013390, Chr26G006300, Chr26G018760
Poaceae	Thinopyrum elongatum	7	Tel2E01G528000, Tel2E01G978000, Tel3E01G602100 ... Tel6E01G355300, Tel6E01G690900, Tel6E01G691000, Tel6E01G692100
Poaceae	Triticum dicoccoides	11	gene_TRIDC2AG043180, gene_TRIDC2BG046000 ... gene_TRIDC2BG087150, gene_TRIDC3AG054040, gene_TRIDC3BG060720, gene_TRIDC6AG025840, gene_TRIDC6AG056870, gene_TRIDC6AG056930, gene_TRIDC6BG032080, gene_TRIDC6BG066330, gene_TRIDC6BG066420
Poaceae	Triticum aestivum	19	TraesCS2A02G298000.1.cds1, TraesCS2B02G314500.1.cds1 ... TraesCS2B02G601300.1.cds1, TraesCS2D02G296100.1.cds1, TraesCS2D02G594700.1.cds1, TraesCS3A02G376900.1.cds1, TraesCS3B02G409400.1.cds1, TraesCS3D02G370000.1.cds1, TraesCS6A02G176800.1.cds1, TraesCS6A02G382300.1.cds1, TraesCS6A02G382800.1.cds1, TraesCS6B02G209000.1.cds1, TraesCS6B02G420600.1.cds1, TraesCS6B02G421400.1.cds1, TraesCS6B02G421900.1.cds1, TraesCS6D02G167300.1.cds1, TraesCS6D02G367100.1.cds1, TraesCS6D02G367600.1.cds1, TraesCSU02G036400.1.cds1
Poaceae	Zea mays	4	Zm00001eb065620_P001, Zm00001eb083490_P001 ... Zm00001eb146830_P001, Zm00001eb243070_P001
Poaceae	Zoysia japonica	6	nbis-gene-20790, nbis-gene-25586, nbis-gene-28644 ... nbis-gene-43055, nbis-gene-6249, nbis-gene-7706
Poaceae	Zoysia macrostachya	5	Zma_g11610, Zma_g13648, Zma_g21258, Zma_g22274, Zma_g24775
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.2779, evm.TU.LG14.166, evm.TU.LG16.886 ... evm.TU.LG19.1121, evm.TU.LG19.1122, evm.TU.LG24.1122, evm.TU.LG24.1123
Posidoniaceae	Posidonia oceanica	6	gene.Posoc05g16590, gene.Posoc05g21250, gene.Posoc05g21270 ... gene.Posoc05g21290, gene.Posoc06g11430, gene.Posoc08g08760
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_12_RagTag.502, evm.TU.Scaffold_13_RagTag.546 ... evm.TU.Scaffold_13_RagTag.548, evm.TU.Scaffold_1_RagTag.1329, evm.TU.Scaffold_1_RagTag.1330, evm.TU.Scaffold_2_RagTag.1058, evm.TU.Scaffold_2_RagTag.1059
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-30534, nbisL1-mrna-30540, nbisL1-mrna-4129 ... nbisL1-mrna-4132, nbisL1-mrna-4133, nbisL1-mrna-6268, nbisL1-mrna-6269
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-10002, nbisL1-mrna-10922, nbisL1-mrna-12696 ... nbisL1-mrna-12697, nbisL1-mrna-18161, nbisL1-mrna-18162, nbisL1-mrna-922
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10159, nbisL1-mrna-15935, nbisL1-mrna-19758 ... nbisL1-mrna-4113, nbisL1-mrna-4114
Rhizophoraceae	Kandelia candel	7	add.evm.TU.utg000009l.218, add.evm.TU.utg000009l.219 ... add.evm.TU.utg000015l.117, add.evm.TU.utg000015l.118, add.evm.TU.utg000016l.158, add.evm.TU.utg000016l.159, add.evm.TU.utg000027l.120
Rhizophoraceae	Kandelia obovata	1	Maker00016385
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-18407, nbisL1-mrna-18408, nbisL1-mrna-19786 ... nbisL1-mrna-19787, nbisL1-mrna-21797, nbisL1-mrna-21798
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-13505, nbisL1-mrna-13506, nbisL1-mrna-15246 ... nbisL1-mrna-5692, nbisL1-mrna-5693, nbisL1-mrna-8962, nbisL1-mrna-8964
Salicaceae	Populus euphratica	10	populus_peu12406, populus_peu12407, populus_peu25841 ... populus_peu25844, populus_peu25965, populus_peu25966, populus_peu27536, populus_peu31525, populus_peu35523, populus_peu35524
Solanaceae	Lycium barbarum	14	gene-LOC132599499, gene-LOC132600638, gene-LOC132624657 ... gene-LOC132624699, gene-LOC132625924, gene-LOC132625925, gene-LOC132625926, gene-LOC132625929, gene-LOC132626171, gene-LOC132629235, gene-LOC132629236, gene-LOC132629238, gene-LOC132629395, gene-LOC132629397
Solanaceae	Solanum chilense	6	SOLCI001911800, SOLCI002001200, SOLCI006022200 ... SOLCI006290800, SOLCI007075800, SOLCI007440700
Solanaceae	Solanum pennellii	10	gene-LOC107003505, gene-LOC107005160, gene-LOC107014919 ... gene-LOC107015434, gene-LOC107016477, gene-LOC107022843, gene-LOC107023180, gene-LOC107023258, gene-LOC107030401, gene-LOC107030938
Tamaricaceae	Reaumuria soongarica	3	STRG.26375_chr11_+, gene_12201, gene_1274
Tamaricaceae	Tamarix chinensis	3	TC03G1685, TC03G1689, TC05G2736
Zosteraceae	Zostera marina	3	Zosma01g21400.v3.1, Zosma02g01770.v3.1, Zosma04g23700.v3.1