Basic Information
Locus ID:
CQ.Regalona.r1.9AG0024340
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 58604154 | 58607891 | + | CQ.Regalona.r1.9AG0024340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 34,216.33 Da | 34.88 | 85.40 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 41 | 162 | 1.0E-10 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 187 | 267 | 7.3E-7 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 40 | 291 | 2.43E-88 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 26 | 295 | 1.2E-98 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_021776132.1 | probable CCR4-associated factor 1 homolog 7 [Chenopodium quinoa] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RGC8 | poly(A)-specific ribonuclease OS=Spinacia oleracea OX=3562 GN=SOVF_069530 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology