Basic Information
Locus ID:
CQ.Regalona.r1.9AG0022750
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 57107818 | 57121670 | + | CQ.Regalona.r1.9AG0022750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 98,284.54 Da | 44.48 | 104.03 | 0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 463 | 888 | 3.14192E-112 | IPR044644 |
| CDD | cd00118 | LysM | 173 | 215 | 2.68574E-8 | IPR018392 |
| CDD | cd00118 | LysM | 109 | 154 | 5.03975E-7 | IPR018392 |
| Pfam | PF01476 | LysM domain | 109 | 155 | 2.8E-8 | IPR018392 |
| Pfam | PF01476 | LysM domain | 173 | 216 | 6.7E-9 | IPR018392 |
| Pfam | PF01554 | MatE | 471 | 627 | 2.5E-14 | IPR002528 |
| Pfam | PF01554 | MatE | 708 | 850 | 2.8E-10 | IPR002528 |
| SUPERFAMILY | SSF54106 | LysM domain | 171 | 216 | 3.66E-7 | IPR036779 |
| SUPERFAMILY | SSF54106 | LysM domain | 108 | 156 | 1.57E-5 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 164 | 221 | 3.0E-10 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 107 | 163 | 6.4E-12 | IPR036779 |
| SMART | SM00257 | LysM_2 | 108 | 155 | 5.3E-7 | IPR018392 |
| SMART | SM00257 | LysM_2 | 172 | 216 | 2.3E-10 | IPR018392 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 471 | 872 | 3.9E-79 | IPR002528 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 171 | 215 | 13.25285 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 107 | 154 | 12.671185 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38380.3 | - | 0 |
| RefSeq | XP_021776294.1 | protein DETOXIFICATION 45, chloroplastic-like [Chenopodium quinoa] | 0 |
| Q9SVE7 | Protein DETOXIFICATION 45, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX45 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MCE5 | Protein DETOXIFICATION OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology