Basic Information
Locus ID:
CQ.Regalona.r1.9AG0021670
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 56114584 | 56125186 | + | CQ.Regalona.r1.9AG0021670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 201,924.59 Da | 47.10 | 84.11 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1454 | 1874 | 1.21271E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1501 | 1879 | 2.3E-81 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1447 | 1872 | 6.8E-96 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 168 | 638 | 3.54E-40 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1396 | 1642 | 2.3E-45 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 157 | 479 | 2.1E-51 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 519 | 647 | 2.3E-5 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1753 | 1877 | 5.5E-32 | - |
| SMART | SM00185 | arm_5 | 326 | 364 | 8.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 200 | 241 | 78.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1465 | 1879 | 1.3E-85 | IPR000569 |
| SMART | SM00185 | arm_5 | 283 | 323 | 73.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1580 | 1879 | 55.575813 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 1157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 1002 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1034 | 1048 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1124 | 1157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1268 | 1292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1263 | 1292 | - | - |
| Coils | Coil | Coil | 662 | 682 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021753072.1 | E3 ubiquitin-protein ligase UPL3-like [Chenopodium quinoa] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LGE5 | HECT-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology