Basic Information
Locus ID:
CQ.Regalona.r1.9AG0017310
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 51884096 | 51886298 | + | CQ.Regalona.r1.9AG0017310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 18,663.83 Da | 39.61 | 53.80 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 24 | 136 | 1.9E-21 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 163 | 7.97E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 163 | 2.6E-6 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 5 | 135 | 1.0E-30 | IPR043151 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 1.5E-42 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 23.467997 | IPR001025 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39100.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. Putative transcription factor containing a PHD finger and BAH motif, required for normal development | 0 |
| RefSeq | XP_021731534.1 | chromatin remodeling protein SHL-like [Chenopodium quinoa] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LDM2 | Chromatin remodeling protein SHL-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology