Basic Information
Locus ID:
CQ.Regalona.r1.9AG0014350
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 48427251 | 48436295 | - | CQ.Regalona.r1.9AG0014350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 166,666.91 Da | 37.37 | 106.23 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 620 | 820 | 1.75773E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1240 | 1460 | 9.72635E-118 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 923 | 1217 | 4.51588E-92 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 307 | 594 | 1.79909E-93 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 307 | 573 | 4.5E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 925 | 1165 | 3.0E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 638 | 772 | 3.9E-21 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1259 | 1407 | 6.9E-31 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 922 | 1223 | 1.57E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1235 | 1469 | 2.99E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 294 | 605 | 7.85E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 842 | 3.84E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 602 | 857 | 1.0E-72 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 278 | 601 | 3.6E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1225 | 1478 | 9.6E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 888 | 1223 | 1.5E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1268 | 1453 | 3.3E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 647 | 820 | 6.7E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 925 | 1205 | 37.459484 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1242 | 1476 | 18.847666 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 306 | 586 | 32.084225 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 622 | 843 | 22.315702 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 745 | 759 | - | IPR017871 |
| Coils | Coil | Coil | 880 | 900 | - | - |
| Coils | Coil | Coil | 467 | 487 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021731880.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology