Basic Information
Locus ID:
CQ.Regalona.r1.9AG0014340
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 48416368 | 48423554 | + | CQ.Regalona.r1.9AG0014340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 135,422.66 Da | 36.64 | 106.29 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 653 | 947 | 1.20614E-95 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 37 | 324 | 4.94704E-103 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 350 | 550 | 8.84174E-112 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 970 | 1190 | 5.33492E-122 | - |
| Pfam | PF00005 | ABC transporter | 368 | 502 | 6.1E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 35 | 303 | 7.1E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 989 | 1137 | 8.4E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 655 | 896 | 1.1E-30 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 345 | 572 | 1.36E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 965 | 1197 | 1.62E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 652 | 953 | 2.75E-54 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 25 | 335 | 3.4E-32 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 955 | 1208 | 6.5E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 618 | 953 | 1.1E-63 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 12 | 332 | 9.4E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 333 | 585 | 1.5E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 377 | 550 | 7.9E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 998 | 1190 | 2.4E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 36 | 316 | 31.620283 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 972 | 1206 | 18.760965 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 655 | 935 | 37.449974 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 352 | 573 | 22.362387 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 475 | 489 | - | IPR017871 |
| Coils | Coil | Coil | 197 | 217 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021731882.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LEG2 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology