halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.9AG0014280

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: heme protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9A	48314163	48315829	-	CQ.Regalona.r1.9AG0014280

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.52	29,447.93 Da	32.90	75.28	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02167	Cytochrome C1 family	52	266	5.8E-95	IPR002326
SUPERFAMILY	SSF46626	Cytochrome c	45	233	2.07E-70	IPR036909
SUPERFAMILY	SSF81496	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	234	267	1.83E-8	IPR021157
Gene3D	G3DSA:1.20.5.100	-	235	267	1.4E-11	-
Gene3D	G3DSA:1.10.760.10	-	41	234	2.8E-89	IPR036909
ProSiteProfiles	PS51007	Cytochrome c family profile.	64	232	7.850448	IPR009056
PRINTS	PR00603	Cytochrome C1 signature	234	249	2.6E-76	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	113	133	2.6E-76	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	146	170	2.6E-76	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	195	214	2.6E-76	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	215	234	2.6E-76	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	184	195	2.6E-76	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	70	89	2.6E-76	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	50	69	2.6E-76	IPR002326

Gene Ontology

Molecular Function:

GO:0009055 (electron transfer activity) GO:0020037 (heme binding)

KEGG Pathway

KO Term:

K00413 (ubiquinol-cytochrome c reductase cytochrome c1 subunit)

Pathway:

ko00190 (Oxidative phosphorylation) map00190 (Oxidative phosphorylation) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko02020 (Two-component system) map02020 (Two-component system)

Module:

M00151 (Cytochrome bc1 complex respiratory unit) M00152 (Cytochrome bc1 complex)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G40810.1	Cytochrome C1 family.
RefSeq	XP_021653224.1	cytochrome c1-2, heme protein, mitochondrial isoform X3 [Hevea brasiliensis]
Swiss-Prot	Q9FKS5	Cytochrome c1 2, heme protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CYC1-2 PE=1 SV=1
TrEMBL	A0A803LEH0	Cytochrome c domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17711, jg25396, jg27178, jg40446
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19548, gene_21375
Amaranthaceae	Atriplex hortensis	2	Ah001165, Ah010635
Amaranthaceae	Beta vulgaris	1	BVRB_5g116480
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg30484, Sbi_jg46453, Sbi_jg58767
Amaranthaceae	Salicornia europaea	2	Seu_jg20769, Seu_jg28640
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005224, GOSA_00014990
Amaranthaceae	Suaeda glauca	5	Sgl55277, Sgl55974, Sgl60541, Sgl60543, Sgl61146
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000004851, gene:ENSEOMG00000021319 ... gene:ENSEOMG00000024600, gene:ENSEOMG00000038583, gene:ENSEOMG00000051041
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0022290, CQ.Regalona.r1.5BG0023700 ... CQ.Regalona.r1.7BG0010350, CQ.Regalona.r1.9AG0014280
Anacardiaceae	Pistacia vera	5	pistato.v30023980, pistato.v30115950, pistato.v30115980 ... pistato.v30126760, pistato.v30127610
Apiaceae	Apium graveolens	2	Ag4G00719, Ag9G00421
Arecaceae	Cocos nucifera	3	COCNU_08G009680, COCNU_08G009840, COCNU_08G011570
Arecaceae	Phoenix dactylifera	10	gene-LOC103698836, gene-LOC103699919, gene-LOC103700669 ... gene-LOC103706947, gene-LOC103722276, gene-LOC103722292, gene-LOC113461592, gene-LOC120105508, gene-LOC120111415, gene-LOC120113009
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.157.V1.1, AsparagusV1_05.3210.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G27774, Ftri1G24212, Ftri1G25190, Ftri6G27416
Brassicaceae	Arabidopsis thaliana	2	AT3G27240.1, AT5G40810.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10004628m.g.v1.0, Thhalv10027856m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g16370.v2.2, Sp7g01100.v2.2
Brassicaceae	Brassica nigra	4	BniB01g025670.2N, BniB02g067400.2N, BniB04g007420.2N ... BniB07g035800.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G1971
Casuarinaceae	Casuarina glauca	1	Cgl02G2044
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g12390, gene.Cymno08g01000
Dunaliellaceae	Dunaliella salina	1	Dusal.0291s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g09240
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2290, nbisL1-mrna-5534
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.433, evm.TU.LG05.183
Plantaginaceae	Plantago ovata	2	Pov_00015457, Pov_00027793
Plumbaginaceae	Limonium bicolor	2	Lb2G11929, Lb2G14520
Poaceae	Echinochloa crus-galli	6	AH02.4443, AH08.2361, BH02.4482, BH08.2518, CH02.4529 ... CH08.2700
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0045850, gene-QOZ80_1BG0095820 ... gene-QOZ80_8AG0640480, gene-QOZ80_8BG0669070
Poaceae	Lolium multiflorum	1	gene-QYE76_030689
Poaceae	Oryza coarctata	4	Oco01G029430, Oco02G030620, Oco09G005740, Oco09G005750
Poaceae	Oryza sativa	2	LOC_Os01g70960.1, LOC_Os05g23620.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G396300, gene-BS78_07G225200
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403389
Poaceae	Sporobolus alterniflorus	7	Chr02G001510, Chr05G032930, Chr05G033040, Chr20G003180 ... Chr20G003190, Chr29G000450, Chr29G000460
Poaceae	Thinopyrum elongatum	2	Tel3E01G725300, Tel7E01G480500
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG064740, gene_TRIDC3BG073120 ... gene_TRIDC7AG036540, gene_TRIDC7BG027720
Poaceae	Triticum aestivum	5	TraesCS3A02G458200.1, TraesCS3D02G451000.1 ... TraesCS7A02G278100.1, TraesCS7B02G175500.1, TraesCS7D02G277900.1
Poaceae	Zea mays	2	Zm00001eb039620_P001, Zm00001eb176210_P001
Poaceae	Zoysia japonica	3	nbis-gene-17645, nbis-gene-28219, nbis-gene-42860
Poaceae	Zoysia macrostachya	3	Zma_g11890, Zma_g23427, Zma_g24519
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.2527, evm.TU.LG14.1667
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g06630, gene.Posoc03g22430, gene.Posoc04g09310 ... gene.Posoc05g03010, gene.Posoc07g15540, gene.Posoc09g02070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1215, evm.TU.Scaffold_6_RagTag.91 ... evm.TU.Scaffold_3_RagTag.2001
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-14903
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-6807, nbisL1-mrna-826
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-82
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000019l.12, evm.TU.utg000011l.65
Rhizophoraceae	Kandelia obovata	2	Maker00001603, Maker00007234
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11910, nbisL1-mrna-11987
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-17498
Salicaceae	Populus euphratica	2	populus_peu08441, populus_peu36909
Solanaceae	Lycium barbarum	5	gene-LOC132598606, gene-LOC132603665, gene-LOC132622628 ... gene-LOC132631194, gene-LOC132635308
Solanaceae	Solanum chilense	3	SOLCI000007600, SOLCI004752500, SOLCI006740600
Solanaceae	Solanum pennellii	3	gene-LOC107007360, gene-LOC107011068, gene-LOC107023559
Tamaricaceae	Reaumuria soongarica	2	STRG.13892_chr05_-, gene_2311
Tamaricaceae	Tamarix chinensis	2	TC01G3504, TC03G1333
Zosteraceae	Zostera marina	2	Zosma01g34250.v3.1, Zosma05g01820.v3.1