Basic Information
Locus ID:
CQ.Regalona.r1.9AG0011100
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 42739803 | 42745074 | + | CQ.Regalona.r1.9AG0011100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 137,175.34 Da | 40.82 | 104.87 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 550 | 724 | 1.48383E-84 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 826 | 1018 | 4.171E-52 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1061 | 1171 | 1.0E-17 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 825 | 967 | 8.2E-16 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 825 | 1018 | 5.62E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 547 | 745 | 7.39E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1035 | 1217 | 2.66E-41 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 279 | 426 | 1.11E-8 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 791 | 1025 | 6.4E-33 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 532 | 761 | 2.1E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1143 | 1234 | 1.2E-13 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 260 | 531 | 2.6E-15 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1026 | 1142 | 3.0E-34 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1069 | 1195 | 1.1E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 825 | 1006 | 20.050264 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 453 | 747 | 15.646402 | IPR003439 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 805 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M645 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology