Basic Information
Locus ID:
CQ.Regalona.r1.9AG0009930
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 39546985 | 39553899 | - | CQ.Regalona.r1.9AG0009930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 96,431.57 Da | 58.83 | 71.90 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 802 | 840 | 2.6779E-15 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 800 | 846 | 2.7E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 786 | 847 | 7.07E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 787 | 853 | 3.6E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 802 | 841 | 10.010774 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 472 | - | - |
| Coils | Coil | Coil | 358 | 378 | - | - |
| Coils | Coil | Coil | 730 | 757 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021732900.1 | uncharacterized protein LOC110699684 [Chenopodium quinoa] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6F8 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology