Basic Information
Locus ID:
CQ.Regalona.r1.9AG0009760
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the peroxisomal membrane protein PXMP2 4 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 38951104 | 38957893 | - | CQ.Regalona.r1.9AG0009760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 49,307.55 Da | 42.42 | 75.13 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 342 | 383 | 1.19004E-20 | - |
| Pfam | PF04117 | Mpv17 / PMP22 family | 169 | 206 | 7.4E-6 | IPR007248 |
| Pfam | PF13639 | Ring finger domain | 342 | 383 | 2.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 328 | 389 | 1.39E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 325 | 398 | 3.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 342 | 382 | 2.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 342 | 383 | 13.330199 | IPR001841 |
| ProSiteProfiles | PS51867 | Gid-type RING finger profile. | 379 | 431 | 9.360871 | IPR044063 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 48 | - | - |
| Coils | Coil | Coil | 282 | 302 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42770.1 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein. | 0 |
| RefSeq | XP_021732914.1 | putative RING-H2 finger protein ATL71 [Chenopodium quinoa] | 0 |
| Q8BGI1 | RING finger protein 24 OS=Mus musculus OX=10090 GN=Rnf24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M6G9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21317 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011705 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11986, Sbi_jg46915 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21203 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009544 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80394, Sgl82855 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016504, gene:ENSEOMG00000039010 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0009760, CQ.Regalona.r1.9BG0012960 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30089040 |
| Apiaceae | Apium graveolens | 1 | Ag2G01655 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708971 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.959.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G42770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017191m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g003260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2687 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2784 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04350 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0197s00004.v1.0, Dusal.2223s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g23250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10247, nbisL1-mrna-6785 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1374 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004650 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20096, Lb3G20098 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3066, BH02.3152, CH02.3372 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0032050, gene-QOZ80_1BG0082260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0286710.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055434 |
| Poaceae | Oryza coarctata | 2 | Oco01G019920, Oco02G019850 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g53060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G265200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602125 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G010500, Chr03G007200, Chr03G015470, Chr05G022900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G463600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG041720, gene_TRIDC3BG047080 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G281800.1, TraesCS3B02G315500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb361970_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12811, nbis-gene-26379 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11067, Zma_g8583 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1035, evm.TU.LG11.227 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1280 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11755 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16680 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11173 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.751 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013000 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9792 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19975 |
| Salicaceae | Populus euphratica | 1 | populus_peu21996 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616714 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026595 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5408_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1917 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25850.v3.1 |