Basic Information
Locus ID:
CQ.Regalona.r1.9AG0003800
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 6076508 | 6081735 | + | CQ.Regalona.r1.9AG0003800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 32,100.84 Da | 56.13 | 64.04 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 38 | 119 | 6.1E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 173 | 216 | 2.9E-6 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 221 | 277 | 2.8E-22 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 110 | 167 | 6.28E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 33 | 108 | 3.92E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 221 | 1.65E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 238 | 1.7E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 244 | 280 | 1.4E-15 | - |
| SMART | SM00184 | ring_2 | 174 | 216 | 2.4E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 31 | 107 | 24.437046 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 109 | 173 | 34.45705 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 174 | 216 | 11.22052 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021724402.1 | E3 ubiquitin-protein ligase RZFP34-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MGQ9 | E3 ubiquitin-protein ligase MIEL1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology