Basic Information
Locus ID:
CQ.Regalona.r1.9AG0000250
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 439444 | 454320 | + | CQ.Regalona.r1.9AG0000250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 120,422.76 Da | 48.68 | 78.72 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 932 | 1036 | 3.03814E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 299 | 665 | 9.28817E-80 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 931 | 1027 | 2.2E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 319 | 742 | 7.2E-67 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 781 | 817 | 1.2E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 777 | 823 | 1.92E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 673 | 1083 | 1.9E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 286 | 665 | 1.67E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 528 | 678 | 8.5E-32 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 271 | 361 | 4.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 771 | 831 | 2.3E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 429 | 517 | 9.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 852 | 1082 | 8.1E-54 | IPR027417 |
| SMART | SM00490 | helicmild6 | 944 | 1027 | 1.8E-15 | IPR001650 |
| SMART | SM00487 | ultradead3 | 295 | 635 | 2.8E-29 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 781 | 820 | 11.235273 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 447 | 627 | 11.94261 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 909 | 1080 | 14.034345 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 796 | 805 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 93 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021750620.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MNQ7 | Helicase-like transcription factor CHR28 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology