Basic Information
Locus ID:
CQ.Regalona.r1.8BG0022680
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 75963324 | 75964445 | - | CQ.Regalona.r1.8BG0022680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 43,042.00 Da | 56.42 | 67.67 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 35 | 78 | 8.38679E-20 | - |
| Pfam | PF13639 | Ring finger domain | 35 | 78 | 6.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 84 | 5.05E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 86 | 7.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 36 | 77 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 78 | 11.899158 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 258 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021723735.1 | putative RING-H2 finger protein ATL12 [Chenopodium quinoa] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RH08 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_067600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology