Basic Information
Locus ID:
CQ.Regalona.r1.8BG0022420
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 75633910 | 75637663 | - | CQ.Regalona.r1.8BG0022420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 87,853.08 Da | 41.02 | 68.94 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 227 | 282 | 4.4E-15 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 530 | 754 | 5.1E-72 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 343 | 487 | 6.3E-54 | IPR033443 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 339 | 757 | 6.2E-193 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 546 | 720 | 6.2E-193 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 400 | 434 | 8.571795 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 143 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021723627.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 [Chenopodium quinoa] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RZA4 | ribonuclease P OS=Spinacia oleracea OX=3562 GN=SOVF_011940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology