Basic Information
Locus ID:
CQ.Regalona.r1.8BG0020900
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 73742536 | 73743921 | + | CQ.Regalona.r1.8BG0020900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 53,018.38 Da | 38.97 | 87.46 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 46 | 1.5E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 73 | 1.11E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 57 | 2.0E-8 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 7.4E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 208 | 382 | 4.8E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 52 | 11.643516 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_021764593.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MQD5 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah010927, Ah010931, Ah014397 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g194800 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg40732 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010294 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0021450, CQ.Regalona.r1.8BG0020900 ... |