Basic Information
Locus ID:
CQ.Regalona.r1.8BG0019340
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the DHHC palmitoyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 71874553 | 71891810 | + | CQ.Regalona.r1.8BG0019340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 144,239.39 Da | 39.69 | 87.27 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14270 | UBA | 329 | 358 | 8.26058E-4 | - |
| Pfam | PF01529 | DHHC palmitoyltransferase | 1043 | 1170 | 1.7E-31 | IPR001594 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 808 | 893 | 3.1E-12 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 770 | 800 | 0.0035 | IPR002110 |
| SUPERFAMILY | SSF46934 | UBA-like | 319 | 364 | 1.46E-8 | IPR009060 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 647 | 924 | 9.8E-48 | IPR036770 |
| SUPERFAMILY | SSF46934 | UBA-like | 389 | 435 | 1.94E-5 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 14 | 78 | 4.6E-7 | IPR029071 |
| Gene3D | G3DSA:1.25.40.20 | - | 609 | 710 | 2.5E-6 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 841 | 944 | 1.7E-18 | IPR036770 |
| Gene3D | G3DSA:1.10.8.10 | - | 304 | 376 | 9.0E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 6 | 81 | 1.2E-6 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 745 | 840 | 4.1E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 869 | 898 | 0.0094 | IPR002110 |
| SMART | SM00248 | ANK_2a | 642 | 672 | 4000.0 | IPR002110 |
| SMART | SM00165 | uba_6 | 397 | 434 | 2.2 | IPR015940 |
| SMART | SM00248 | ANK_2a | 836 | 868 | 0.28 | IPR002110 |
| SMART | SM00165 | uba_6 | 325 | 362 | 0.0014 | IPR015940 |
| SMART | SM00165 | uba_6 | 457 | 493 | 8.3 | IPR015940 |
| SMART | SM00248 | ANK_2a | 904 | 933 | 710.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 769 | 798 | 7.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 676 | 704 | 3100.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 836 | 868 | 9.88487 | IPR002110 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 23 | 76 | 10.897798 | IPR000626 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 869 | 893 | 9.88487 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 769 | 800 | 12.089582 | - |
| ProSiteProfiles | PS50216 | DHHC domain profile. | 1043 | 1093 | 25.741459 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 769 | 801 | 13.1702 | IPR002110 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 395 | 435 | 9.293785 | IPR015940 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 836 | 857 | 9.54257 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 869 | 893 | 9.860947 | - |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 323 | 363 | 11.872175 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 642 | - | - |
| Coils | Coil | Coil | 343 | 381 | - | - |
| Coils | Coil | Coil | 601 | 621 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20350.1 | Ankyrin repeat family protein with DHHC zinc finger domain. Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. | 0 |
| RefSeq | XP_021757844.1 | protein S-acyltransferase 24-like [Chenopodium quinoa] | 0 |
| Q52T38 | Protein S-acyltransferase 24 OS=Arabidopsis thaliana OX=3702 GN=PAT24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LX06 | S-acyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15551 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10580 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014226, Ah014425 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25505, Sbi_jg9340 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19264 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011069 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41887, Sgl46689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008964, gene:ENSEOMG00000030455 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7BG0021410, CQ.Regalona.r1.8AG0023030 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30261870, pistato.v30262260 |
| Apiaceae | Apium graveolens | 4 | Ag1G00651, Ag2G01806, Ag3G02731, AgUnG01142 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G017540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715908 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.332.V1.1, AsparagusV1_03.56.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G10033 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G12550.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001944m.g.v1.0, Thhalv10022623m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g26680.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g011240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1427 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1489 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g16910 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0005s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04480 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.622 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001069 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32017 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2484, BH09.2704, CH09.2902 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301910, gene-QOZ80_4BG0332650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0205540.1 |
| Poaceae | Oryza coarctata | 1 | Oco08G016750 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55150.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G256200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300790, Pt_Chr0300807 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G002620, Chr25G002090, Chr26G016720, Chr30G002060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G881500, Tel4E01G045200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG072760, gene_TRIDC2BG078960 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G518400.1, TraesCS2B02G546800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb068670_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22995, nbis-gene-22996 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20545 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g04480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2256 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6633 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4999 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1319 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000556 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1862 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22284 |
| Salicaceae | Populus euphratica | 3 | populus_peu05677, populus_peu11041, populus_peu11064 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603092 |
| Solanaceae | Solanum chilense | 1 | SOLCI004481300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024036 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9013 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1167 |