Basic Information
Locus ID:
CQ.Regalona.r1.8BG0018750
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 71191464 | 71199768 | - | CQ.Regalona.r1.8BG0018750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 56,999.11 Da | 45.30 | 90.53 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 338 | 387 | 0.00286648 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 105 | 225 | 4.3E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 3.2E-7 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 241 | 271 | 2.4E-7 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 337 | 394 | 8.83E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 293 | 1.1E-46 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 162 | 1.0E-29 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 163 | 303 | 1.2E-24 | IPR036770 |
| SMART | SM00184 | ring_2 | 338 | 387 | 0.0037 | IPR001841 |
| SMART | SM00248 | ANK_2a | 134 | 164 | 0.038 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 1.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 100 | 129 | 0.057 | IPR002110 |
| SMART | SM00248 | ANK_2a | 197 | 226 | 9.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 240 | 269 | 1.8E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 197 | 225 | 11.426298 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.142647 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.25033 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 388 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 197 | 229 | 11.8347 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 240 | 271 | 11.214048 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 134 | 155 | 9.965 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 240 | 272 | 12.42232 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 134 | 155 | 9.940542 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 353 | 362 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021731376.1 | E3 ubiquitin-protein ligase XBAT32-like [Chenopodium quinoa] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNZ5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_158010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology