Basic Information
Locus ID:
CQ.Regalona.r1.8BG0017560
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 69299094 | 69308380 | - | CQ.Regalona.r1.8BG0017560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 45,744.73 Da | 50.66 | 70.97 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 5.45023E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 4.16863E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 263 | 337 | 1.1329E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 265 | 330 | 7.9E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 2.7E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 2.8E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 46 | 135 | 1.05E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 134 | 222 | 8.6E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 255 | 342 | 9.09E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 139 | 4.4E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 221 | 5.2E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 241 | 341 | 1.9E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 6.6E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 3.5E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 264 | 333 | 2.4E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 17.335848 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 263 | 337 | 14.828703 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 15.306254 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021749999.1 | oligouridylate-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QES4 | Oligouridylate-binding protein 1-like OS=Spinacia oleracea OX=3562 GN=SOVF_192880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology