Basic Information
Locus ID:
CQ.Regalona.r1.8BG0015980
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 66495551 | 66500995 | - | CQ.Regalona.r1.8BG0015980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 44,952.89 Da | 41.16 | 90.53 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 61 | 323 | 2.6E-119 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 61 | 323 | 9.34E-57 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 327 | 380 | 4.45E-8 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 88 | 389 | 1.4E-108 | IPR027417 |
| SMART | SM00382 | AAA_5 | 111 | 290 | 0.0027 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 58 | 379 | 6.3E-136 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 257 | 328 | 26.256922 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 89 | 248 | 35.925678 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 269 | 277 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 147 | 176 | 9.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 352 | 369 | 9.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 181 | 210 | 9.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 266 | 294 | 9.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 219 | 248 | 9.7E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 299 | 328 | 9.7E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 58 | 384 | 42.877506 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 416 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021747065.1 | DNA repair protein recA homolog 3, mitochondrial-like [Chenopodium quinoa] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MRP4 | DNA repair protein recA homolog 3, mitochondrial OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology