Basic Information
Locus ID:
CQ.Regalona.r1.8BG0013810
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 59006365 | 59013471 | + | CQ.Regalona.r1.8BG0013810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 69,660.22 Da | 36.50 | 93.57 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 124 | 4.8043E-44 | - |
| Pfam | PF03000 | NPH3 family | 211 | 464 | 3.7E-86 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 2.2E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 116 | 6.2E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 120 | 8.2E-13 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 488 | 85.369499 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.69564 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 524 | - | - |
| Coils | Coil | Coil | 527 | 554 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_021766219.1 | BTB/POZ domain-containing protein NPY2-like [Chenopodium quinoa] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N177 | BTB/POZ domain-containing protein NPY4 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology