Basic Information
Locus ID:
CQ.Regalona.r1.8BG0013080
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 54721562 | 54723269 | - | CQ.Regalona.r1.8BG0013080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 41,368.65 Da | 40.82 | 92.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 39 | 2.0E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 49 | 6.02E-11 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 149 | 229 | 3.79E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 54 | 7.3E-8 | - |
| SMART | SM00256 | fbox_2 | 3 | 43 | 7.6E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 121 | 306 | 2.3E-15 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48060.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021747417.1 | putative F-box protein At5g52610 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MP44 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah016045, Ah039023 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8BG0013080, CQ.Regalona.r1.8BG0014880 |