Basic Information
Locus ID:
CQ.Regalona.r1.8BG0012230
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 44465117 | 44488830 | + | CQ.Regalona.r1.8BG0012230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 88,572.44 Da | 53.42 | 84.52 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 622 | 681 | 1.27353E-10 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 204 | 337 | 5.0E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 643 | 681 | 2.3E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 621 | 684 | 1.31E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 105 | 363 | 2.47E-18 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 109 | 368 | 4.2E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 617 | 689 | 5.4E-10 | - |
| SMART | SM00577 | forpap2 | 214 | 347 | 4.4E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 620 | 684 | 1.9E-8 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 112 | 360 | 16.028873 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 619 | 685 | 12.887878 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 765 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021718885.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Chenopodium quinoa] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803NAQ6 | protein-serine/threonine phosphatase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology