Basic Information
Locus ID:
CQ.Regalona.r1.8BG0010240
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Replication factor A
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 20834805 | 20837694 | + | CQ.Regalona.r1.8BG0010240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 48,037.92 Da | 39.42 | 82.11 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 32 | 120 | 1.88568E-21 | - |
| CDD | cd04481 | RPA1_DBD_B_like | 156 | 255 | 3.07277E-14 | - |
| CDD | cd04476 | RPA1_DBD_C | 311 | 398 | 2.80494E-18 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 311 | 399 | 7.9E-10 | IPR013955 |
| Pfam | PF02721 | Domain of unknown function DUF223 | 57 | 125 | 2.2E-9 | IPR003871 |
| Pfam | PF16900 | Replication protein A OB domain | 148 | 244 | 3.7E-9 | IPR031657 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 135 | 255 | 1.2E-18 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 283 | 398 | 4.63E-17 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 16 | 125 | 6.43E-15 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 269 | 414 | 1.3E-23 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 129 | 263 | 1.7E-29 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 16 | 122 | 1.0E-17 | - |
| Coils | Coil | Coil | 287 | 307 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021859321.1 | replication protein A 70 kDa DNA-binding subunit B-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A8J4QF91 | Rep_fac-A_C domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_024594 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology