Basic Information
Locus ID:
CQ.Regalona.r1.8BG0008630
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 13496025 | 13501073 | + | CQ.Regalona.r1.8BG0008630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 103,942.93 Da | 43.15 | 88.13 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 764 | 902 | 4.70466E-65 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 438 | 679 | 1.9E-74 | IPR013103 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 61 | 199 | 5.16E-25 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 439 | 870 | 2.22E-33 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 58 | 210 | 6.2E-22 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 128 | 202 | 9.916727 | IPR001584 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_048494802.1 | uncharacterized protein LOC109134389 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2P6S8W7 | Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0320771 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |