Basic Information
Locus ID:
CQ.Regalona.r1.8BG0005590
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 6707830 | 6716834 | + | CQ.Regalona.r1.8BG0005590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 69,568.85 Da | 47.70 | 70.02 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 357 | 634 | 8.57008E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 425 | 2.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 549 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 358 | 383 | 0.0058 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 433 | 469 | 0.17 | IPR001680 |
| Pfam | PF08513 | LisH | 18 | 37 | 9.9E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 599 | 633 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 346 | 633 | 2.44E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 261 | 478 | 2.5E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 479 | 634 | 1.5E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 553 | 592 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 595 | 634 | 3.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 508 | 9.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 4.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 549 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 469 | 3.7E-5 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 0.001 | IPR006594 |
| SMART | SM00320 | WD40_4 | 386 | 425 | 8.2E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 436 | 478 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 436 | 471 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 426 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.512828 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 602 | 634 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 426 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 392 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 602 | 634 | 12.762857 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 456 | 470 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 204 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021740613.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Chenopodium quinoa] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LQ00 | LisH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology