Basic Information
Locus ID:
CQ.Regalona.r1.8BG0005010
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 5919184 | 5930212 | + | CQ.Regalona.r1.8BG0005010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 109,991.69 Da | 58.34 | 78.57 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 233 | 367 | 7.8951E-21 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 256 | 365 | 8.5E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 781 | 821 | 1.1E-4 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 887 | 951 | 1.6E-7 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 758 | 821 | 1.44E-9 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 135 | 393 | 7.69E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 882 | 955 | 1.98E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 885 | 955 | 6.7E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 760 | 836 | 8.7E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 135 | 397 | 6.7E-26 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 884 | 952 | 2.1E-6 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 758 | 822 | 1.6E-7 | IPR014720 |
| SMART | SM00577 | forpap2 | 200 | 376 | 8.8E-13 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 880 | 953 | 12.717945 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 757 | 823 | 10.460249 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 141 | 389 | 15.109128 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 970 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 868 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 974 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 878 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 741 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021726412.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Chenopodium quinoa] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPU6 | protein-serine/threonine phosphatase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology