Basic Information
Locus ID:
CQ.Regalona.r1.8BG0004760
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 5592735 | 5608290 | + | CQ.Regalona.r1.8BG0004760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 136,379.80 Da | 45.79 | 77.26 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 514 | 819 | 2.29443E-89 | - |
| CDD | cd18793 | SF2_C_SNF | 1092 | 1199 | 3.98528E-54 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 534 | 897 | 5.1E-69 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 935 | 971 | 8.7E-6 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1089 | 1189 | 4.8E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 500 | 819 | 1.08E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 931 | 978 | 4.37E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 828 | 1246 | 3.38E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 832 | 928 | 1.5E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 489 | 831 | 1.5E-51 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1011 | 1246 | 2.0E-57 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 929 | 986 | 4.0E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 935 | 973 | 3.5E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 510 | 798 | 6.6E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1106 | 1189 | 1.8E-19 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 935 | 971 | 10.600894 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 529 | 781 | 13.357275 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1083 | 1242 | 15.333968 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 950 | 959 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 587 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021726387.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LLB4 | Helicase ATP-binding domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology