Basic Information
Locus ID:
CQ.Regalona.r1.8BG0004650
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 5439934 | 5451646 | - | CQ.Regalona.r1.8BG0004650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 93,185.26 Da | 45.92 | 77.25 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 29 | 253 | 9.77804E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.0042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 2.3E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 7.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 252 | 0.13 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 685 | 843 | 8.5E-47 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 4.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 44 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 293 | 5.95E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 132 | 6.5E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 296 | 7.0E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 1.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 7.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.026 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.459436 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.654854 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 12.235586 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.314676 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.501034 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.217871 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 1.6E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 846 | 19.104828 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 461 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_021726376.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Chenopodium quinoa] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LLA4 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology